01 - Preheat oven to 400°F. Line a baking sheet with parchment paper or aluminum foil.
02 - In a medium bowl, whisk together the chipotle peppers in adobo, honey, olive oil, apple cider vinegar, minced garlic, smoked paprika, kosher salt, and black pepper until smooth and well combined. Set aside 2 tablespoons of the glaze for finishing later.
03 - Pat the chicken thighs thoroughly dry with paper towels and arrange them skin-side up on the prepared baking sheet.
04 - Brush the chipotle-honey glaze generously over each chicken thigh, ensuring full, even coverage on all surfaces.
05 - Bake for 30 minutes, or until the skin is golden brown and the internal temperature reaches 165°F at the thickest part.
06 - Remove the baking sheet from the oven. Brush the reserved glaze over each thigh, then distribute the shredded smoked Gouda evenly across the top of each piece.
07 - Return to the oven for 5 minutes, or until the Gouda is fully melted and bubbling.
08 - Transfer to a serving platter, garnish with fresh cilantro, and serve alongside lime wedges.